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Korkin, Dmitry
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Masters Theses
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1.
Deciphering the Role of Alternative Splicing in Molecular Assemblies: Are Immortalized Cell Lines Good Data Sources?
Keyword:
structure
,
conservation
,
alternative splicing
, and
molecular assembly
Creator:
Bao, Yue
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2024-05-04
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
2.
Patterns of Viral Signal Peptide Sequences and their Corresponding Hosts
Keyword:
Virus
,
Viral-host evolution
,
Phylogeny
, and
Signal peptides
Creator:
Le, Ann-Elizabeth V.
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-09-20
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
3.
A landscape of population-specific variation effects on ligand binding site in the healthy population
Creator:
Sun, Mo
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-04-28
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
4.
ELUCIDATION OF PERSISTENT MUTATIONAL LANDSCAPE IN SARS-CoV-2 MAIN PROTEASE: A STRUCTURAL BIOINFORMATICS ANALYSIS
Keyword:
SARS-CoV-2, Main Protease, spatial-temporal, mutation, persistent, selection, molecular dynamics
Creator:
Mkandawire, Winnie
Advisor:
Korkin, Dmitry
and
Schiffer, Celia
Publisher:
Worcester Polytechnic Institute
Date Created:
2021-05-06
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
5.
Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space
Creator:
Xie, Longsheng
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2020-05-18
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
6.
Studying inter- and intra-tumor heterogeneity of triple-negative breast cancer
Keyword:
unsupervised learning
,
clustering
,
TNBC
, and
cancer
Creator:
Leshchyk, Anastasia
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-28
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
7.
A mixed reality framework for surgical navigation: approach and preliminary results
Keyword:
Mixed Reality
,
Minimally Invasive Surgery
, and
Image Guidance
Creator:
Murlidaran, Shravan
Advisor:
Fichera, Loris
and
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-25
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Robotics Engineering
8.
Propensity of Endogenous Alternative Splicing to Mediate Mutative Damage
Keyword:
Mutation
,
Alternative Splicing
,
Cancer
,
mRNAseq
,
Statistics
, and
Machine Learning
Creator:
Lutz, Ashley
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-25
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
9.
Boosting Gene Expression Clustering with System-Wide Biological Information and Deep Learning
Keyword:
community detection
,
biological network
,
robust autoencoder
,
deep learning
, and
gene expression clustering
Creator:
Cui, Hongzhu
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2019-04-24
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Computer Science
10.
Gene fusions in cancer: Classification of fusion events and regulation patterns of fusion pathway neighbors
Keyword:
Cancer
,
semi-supervised machine learning
,
gene fusion
,
Machine Learning
, and
chromosomal abnormalities
Creator:
Hughes, Katelyn
Advisor:
Korkin, Dmitry
Publisher:
Worcester Polytechnic Institute
Date Created:
2016-05-05
Resource Type:
Thesis
Degree:
MS
Unit (Department):
Bioinformatics & Computational Biology
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Fichera, Loris
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Korkin, Dmitry
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Schiffer, Celia
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Fichera, Loris
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Fischer, Gregory S.
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Kondashov, Fyodor
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Korkin, Dmitry
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Manning, Amity L.
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Unit (Department)
Bioinformatics & Computational Biology
8
Computer Science
1
Robotics Engineering
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Worcester Polytechnic Institute
10
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Thesis
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https://creativecommons.org/licenses/by/4.0/
1