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Filtering by: Contributor Korkin, Dmitry Unit (Department) Bioinformatics & Computational Biology

1. Modeling Approaches to Understanding Bumblebee Behavior and Population Decline

Keyword:: Simulation, Pollinator Decline, Bumblebees, Memory, Deep Learning, and Agent-based model
Creator:: Heath, Kevin
Advisor:: Ryder, Elizabeth F.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2022-08-12
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology

2. Sleep Duration and Quality Assessment using Smartphones

Creator:: Peng, Yuxiao
Advisor:: Agu, Emmanuel O.
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

3. Patterns of Viral Signal Peptide Sequences and their Corresponding Hosts

Keyword:: Virus, Viral-host evolution, Phylogeny, and Signal peptides
Creator:: Le, Ann-Elizabeth V.
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-09-20
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

4. A landscape of population-specific variation effects on ligand binding site in the healthy population

Creator:: Sun, Mo
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-04-28
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

5. ELUCIDATION OF PERSISTENT MUTATIONAL LANDSCAPE IN SARS-CoV-2 MAIN PROTEASE: A STRUCTURAL BIOINFORMATICS ANALYSIS

Keyword:: SARS-CoV-2, Main Protease, spatial-temporal, mutation, persistent, selection, molecular dynamics
Creator:: Mkandawire, Winnie
Advisor:: Korkin, Dmitry and Schiffer, Celia
Publisher:: Worcester Polytechnic Institute
Date Created:: 2021-05-06
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

6. Analysis of the Relationship Between Co-localization of Proteins in Protein Assemblies and Protein Proximity in 3-D Space

Creator:: Xie, Longsheng
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

7. In Silico Edgetic Profiling and Network Analysis of Human Genetic Variants, with an Application to Disease Module Detection

Keyword:: Next Generation Sequencing
Creator:: Cui, Hongzhu
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2020-05-18
Resource Type:: Dissertation
Degree:: PhD
Unit (Department):: Bioinformatics & Computational Biology

8. Simulations of Different P-values Combination Methods Using SNPs on Diverse Biology Levels

Keyword:: statistical power, haplotype block, p-value combination methods, Omni-TFisher, and GEFOS
Creator:: Zhang, Ruosi
Advisor:: Wu, Zheyang
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-05-30
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

9. Studying inter- and intra-tumor heterogeneity of triple-negative breast cancer

Keyword:: unsupervised learning, clustering, TNBC, and cancer
Creator:: Leshchyk, Anastasia
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-28
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology

10. Propensity of Endogenous Alternative Splicing to Mediate Mutative Damage

Keyword:: Mutation, Alternative Splicing, Cancer, mRNAseq, Statistics, and Machine Learning
Creator:: Lutz, Ashley
Advisor:: Korkin, Dmitry
Publisher:: Worcester Polytechnic Institute
Date Created:: 2019-04-25
Resource Type:: Thesis
Degree:: MS
Unit (Department):: Bioinformatics & Computational Biology